University of Alabama at Birmingham · Pathology & Microbiology

The immune system,
observed closely.

An ongoing study of the CD4 T cell — how it directs defense at the body's surfaces, and how its programs turn against the tissues they protect.

Now showing

The Living Atlas


Eighty thousand cells of the infected mouse intestine, drawn from an atlas of over half a million and rendered live in your browser. Turn it in three dimensions; slice it by genotype, time, and tissue; paint it by the expression of a single gene.

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Stylized point cloud of the single-cell atlas: islands of colored cells on a dark field
The Living Atlas Single-cell RNA-seq · 80,000 cells · interactive

The permanent collection

Four rooms


PLATE 01

A third lineage

In 2005 the lab described Th17 cells — a lineage of effector CD4 T cells apart from the Th1 and Th2 paradigms that had held for twenty years. The finding reordered how immunologists understand inflammation.

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PLATE 02

The intestine, negotiated

The gut is the body's largest immune organ — a standing negotiation between tolerance and defense. We follow effector and regulatory T cells through that negotiation, in their native tissue.

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PLATE 03

Defense, turned

The same pathways that protect the intestine can drive inflammatory bowel disease, colorectal cancer, and neonatal sepsis. We study the turn — and where it might be reversed.

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PLATE 04

The living atlas

A working scientific instrument, hung as an exhibit: the lab's single-cell atlas of the infected intestine, explorable point by point.

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Selected works

From the catalogue


The full catalogue

Notices

From the lab