Gallery · The living exhibit

The Living Atlas

Every point is one cell from the intestine of a mouse responding to infection — 80,000 cells drawn from an atlas of over half a million. Slice it by genotype, time, and tissue; paint it by the expression of a gene.

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Genotype

Time

Tissue

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drag to pan · click, then scroll to zoom

Loading the atlas… Single-cell RNA-seq of the mouse intestine across a Citrobacter rodentium infection (days 0–42), comparing normal mice with a conditional knockout whose gut epithelium cannot present antigen on MHC-II (H2-Ab1 deleted in epithelial cells only). Try it: color by H2-Ab1, select the epithelium, and switch genotypes — the knockout goes dark. Then color by Itgae at day 42 to see tissue-resident memory T cells. Points are colored gray where the gene is not detected. The view opens as a slowly orbiting 3D overview — drag to orbit, right- or ⌘-drag to pan, scroll to zoom, R to reset — or switch to 2D for the flat map. Rendered with the lab's own RNA-FLEEK engine, simplified for the web.

Gallery · The collection

Selected images

A rotating selection of the lab's imagery — microscopy, cytometry, and data art. (Placeholders below — drop images into assets/img/gallery/ and update the captions.)

Awaiting acquisition
Microscopy

Untitled No. 1 Immunofluorescence · colonic crypts Caption pending.

Awaiting acquisition
Microscopy

Untitled No. 2 Reporter mice · intestinal sections Caption pending.

Awaiting acquisition
Data visualization

Untitled No. 3 Data art from the atlas Caption pending.

Awaiting acquisition

Untitled No. 4 Medium pending Caption pending.

Awaiting acquisition

Untitled No. 5 Medium pending Caption pending.

Awaiting acquisition

Untitled No. 6 Medium pending Caption pending.